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KHAN, MOHAMMAD ASİF

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MOHAMMAD ASİF
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Item Type: Publication × Author: Tan, Tin Wee × Author: Ranganathan, Shoba ×

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    APBioNet-Transforming Bioinformatics in the Asia-Pacific Region
    (2013-10-01T00:00:00Z) KHAN, MOHAMMAD ASİF; Tan, Tin Wee; Schoenbach, Christian; Ranganathan, Shoba; KHAN, MOHAMMAD ASİF
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    Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi)
    (2010-12-01T00:00:00Z) Tan, Tin Wee; Tong, Joo Chuan; KHAN, MOHAMMAD ASİF; de Silva, Mark; Lim, Kuan Siong; Ranganathan, Shoba; KHAN, MOHAMMAD ASİF
    The 2010 International Conference on Bioinformatics, InCoB2010, which is the annual conference of the Asia-Pacific Bioinformatics Network (APBioNet) has agreed to publish conference papers in compliance with the proposed Minimum Information about a Bioinformatics investigation (MIABi), proposed in June 2009. Authors of the conference supplements in BMC Bioinformatics, BMC Genomics and Immunome Research have consented to cooperate in this process, which will include the procedures described herein, where appropriate, to ensure data and software persistence and perpetuity, database and resource re-instantiability and reproducibility of results, author and contributor identity disambiguation and MIABi-compliance. Wherever possible, datasets and databases will be submitted to depositories with standardized terminologies. As standards are evolving, this process is intended as a prelude to the 100 BioDatabases (BioDB100) initiative whereby APBioNet collaborators will contribute exemplar databases to demonstrate the feasibility of standards-compliance and participate in refining the process for peer-review of such publications and validation of scientific claims and standards compliance. This testbed represents another step in advancing standards-based processes in the bioinformatics community which is essential to the growing interoperability of biological data, information, knowledge and computational resources.
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    Simple re-instantiation of small databases using cloud computing
    (2013-10-01T00:00:00Z) Tan, Tin Wee; Xie, Chao; De Silva, Mark; Lim, Kuan Siong; Patro, C. Pawan K.; Lim, Shen Jean; Govindarajan, Kunde Ramamoorthy; Tong, Joo Chuan; Choo, Khar Heng; Ranganathan, Shoba; KHAN, MOHAMMAD ASİF; KHAN, MOHAMMAD ASİF
    Background: Small bioinformatics databases, unlike institutionally funded large databases, are vulnerable to discontinuation and many reported in publications are no longer accessible. This leads to irreproducible scientific work and redundant effort, impeding the pace of scientific progress.